SciNet-enabled publications
Researchers use SciNet expertise and resources to tackle problems from aerospace engineering to zoology. Users are encouraged to let us know of any SciNet-powered publications, by emailing to support@scinet.utoronto.ca.
Full list of publications (according to Google Scholar)
SciNet publications
covid19.analytics: An R Package to Obtain, Analyze and Visualize Data from the Corona Virus Disease Pandemic
M. Ponce and A. Sanhdel
Journal of Open Source Software, 6(60), 2995 (2021)
arxiv.org:2009.01091
Functional characterization of RebL1 highlights the evolutionary conservation of oncogenic activities of the RBBP4/7 orthologue in Tetrahymena thermophila
Nabeel-Shah et al. (including M. Ponce)
Nucleic Acids Res. (2021), Vol 49, Issue 11 (pp.6196-6212)
biorxiv.org:2020.11.07.372946
Deploying a Top-100 Supercomputer for Large Parallel Workloads: the Niagara Supercomputer
M. Ponce, R. van Zon, S. Northrup, D. Gruner, J. Chen, F. Ertinaz, A. Fedoseev, L. Groer, F. Mao, B. C. Mundim, M. Nolta, J. Pinto, M. Saldarriaga, V. Slavnic, E. J. Spence, C.-H. Yu, and W. R. Peltier
Software-Enhanced Teaching and Visualization Capabilities of an Ultra-High-Resolution Video Wall
R. van Zon and M. Ponce
The Med31 Conserved Component of the Divergent Mediator Complex in Tetrahymena thermophila Participates in Developmental Regulation
J. Garg et al. (including M. Ponce)
RACS: Rapid Analysis of ChIP-Seq data for contig based genomes
M. Ponce, A. Saettone, S. Nabeel‑Shah and J. Fillingham
Trends in Demand, Growth, and Breadth in Scientific Computing Training Delivered by a High-Performance Computing Center
R. van Zon, M. Ponce, E. Spence and D. Gruner
Journal of Computational Science Education vol 10(1) (2019)
arxiv.org:1901.05520
Presented at the Fifth Workshop on Best Practices for Enhancing HPC Training and Education (BPHTE18) @ SC18
Using text-mined trait data to test for cooperate-and-radiate co-evolution between ants and plants
K. M. Kaur, P.-J. G. Malé, E. Spence, C. Gomez, and M. E. Frederickson
PLOS Computational Biology 10 (2019)
biorxiv.org:10.1101/306787
Bridging the Educational Gap between Emerging and Established Scientific Computing Disciplines
M. Ponce, E. Spence, R. van Zon, and D. Gruner
Journal of Computational Science Education, vol 10(1) (2019)
Presented at the Workshop on Strategies for Enhancing HPC Education and Training (SEHET18) @ PEARC18
The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila
A. Saettone, J. Garg, J.‑P. Lambert, S. Nabeel‑Shah, M. Ponce, A. Burtch, C. Thuppu Mudalige, A.‑C. Gingras, R. E. Pearlman, and J. Fillingham,
The influence of neutrinos on r-process nucleosynthesis in the ejecta of black hole–neutron star mergers
L. F. Roberts, J. Lippuner, M. D. Duez, J. A. Faber, F. Foucart, J. C. Lombardi, S. Ning, C. D. Ott, and M. Ponce
Monthly Notices of the Royal Astronomical Society (2017) Volume 464, Issue 4, Pages 3907–3919.
Scientific Computing, High-Performance Computing and Data Science in Higher Education
M. Ponce, E. Spence, D. Gruner and R. van Zon
Journal of Computational Science Education, vol 10(1) (2019)
arxiv.org:1604.05676
Detecting the orientation of magnetic fields in galaxy clusters
C. Pfrommer and L. J. Dursi
SciNet: Lessons Learned from Building a Power-efficient Top-20 System and Data Centre
C. Loken, D. Gruner, L. Groer, R. Peltier, N. Bunn, M. Craig, T. Henriques, J. Dempsey, C.-H.Yu, J. Chen, L. J.Dursi, J. Chong, S. Northrup, J. Pinto, N. Knecht, and R. van Zon